Matthew Radey

 

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Focus

Bioinformatics, data algorithms & analysis, sequencing, pipeline development

Publications

Ixodes scapularis does not harbor a stable midgut microbiome

The Landscape of Type VI Secretion across Human Gut Microbiomes Reveals Its Role in Community Composition

A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria

Inactivation of transcriptional regulators during within-household evolution of Escherichia coli

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection

Restoring CFTR Function Reduces Airway Bacteria and Inflammation in People With Cystic Fibrosis and Chronic Lung Infections

Secreted Effectors Encoded within and outside of the Francisella Pathogenicity Island Promote Intramacrophage Growth

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis

Staphylococcus aureus Protein A Mediates Interspecies Interactions at the Cell Surface of Pseudomonas aeruginosa

Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress

Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis

Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs

Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis

Resources for genetic and genomic analysis of emerging pathogen Acinetobacter baumannii

Cross-Species Comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei Quorum-Sensing Regulons

Genomic analysis of the emergence of 20th century epidemic dysentery

Gastrointestinal pathology in juvenile and adult CFTR-knockout ferrets

Global analysis of the Burkholderia thailandensis quorum sensing-controlled regulon

Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis

Bactobolin resistance is conferred by mutations in the L2 ribosomal protein

Functional genetic screen of human diversity reveals that a methionine salvage enzyme regulates inflammatory cell death

Identification of a p-coumarate degradation regulon in Rhodopseudomonas palustris by Xpression, an integrated tool for prokaryotic RNA-seq data processing

Evolution of Burkholderia pseudomallei in recurrent melioidosis

PGAT: a multistrain analysis resource for microbial genomes

GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis

Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes

Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains