Elizabeth Sims

 

Elizabeth hails from the former UW Genome Center of Dr. Maynard Olson, where she was employed as a research scientist from 1997 until formally joining the Miller Lab at the beginning of 2009. Teamed with long-time UWGC colleague, Dr. Michael Jacobs, Elizabeth now serves to represent the Genomics division of the Miller Lab, in which she lends her professional expertise in molecular cloning techniques toward genetic analysis in support of research aims associated with the Pacific Northwest Regional Center of Excellence. She is engaged with numerous collaborative projects which involve epidemiological and phylogenetic studies of enteric pathogens as they relate to emerging infectious disease and the potential threat of future bioterrorism. Her current area of specialization is focused on further development of new-generation sequencing technologies with emphasis on gram-negative bacterial genomics.

Research Publications:

Karol KG, Jacobs MA, Zhou Y, Sims EH, Gillett WD, Cattolico RA. Comparative analysis of complete mitochondrial genome sequences from two geographically distinct Heterosigma akashiwo (Raphidophyceae) strains. Proceedings of the Seventh International Chrysophyte Symposium. 2010; 261-282.

Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, Chang J, Beskhlebnaya V, Waldor MK, Samadpour M, Whittam TS, Kaul R, Brittnacher M, Miller SI. Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. Infect Immun. 2009 Sep; 77 (9):3713-21.

Cattolico RA, Jacobs MA, Zhou Y, Chang J, Duplessis M, Lybrand T, McKay J, Ong HC, Sims E, Rocap G. Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics. 2008 May 8; 9:211.

Smith EE, Sims EH, Spencer DH, Kaul R, Olson MV. Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa. J Bacteriol. 2005 Mar; 187 (6):2138-47.

Hillier LW et al. The DNA sequence of human chromosome 7. Nature. 2003 July 10; 424 (6945):157-64.

Spencer DH, Kas A, Smith EE, Raymond CK, Sims EH, Hastings M, Burns JL, Kaul R, Olson MV. Whole-genome sequence variation among multiple isolates of Pseudomonas aeruginosa. J Bacteriol. 2003 Feb; 185 (4):1316-25.

Raymond CK, Sims EH, Kas A, Spencer DH, Kutyavin TV, Ivey RG, Zhou Y, Kaul R, Clendenning JB, Olson MV. Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa. J Bacteriol. 2002 Jul; 184 (13):3614-22.

Raymond CK, Sims EH, Olson MV. Linker-mediated recombinational subcloning of large DNA fragments using yeast. Genome Res. 2002 Jan; 12 (1):190-7.